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Note that the IDL Virtual Machine requires installation of the full development version of IDL however, an IDL license is not required to run the Virtual Machine. During the installation you may skip the installation of the license manager. It runs on all IDL-supported platforms and does not require a license to run.
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The IDL VM is a free runtime version of IDL that can execute IDL ‘.sav’ files without an IDL license. Import and export of partially processed data to other software-tools can therefore be avoided.īioMap is based on IDL and need the installation of the IDL Virtual Machine (IDL VM) on the same computer. BioMap comprises all tools, which are required to process single-subject-data, to combine results from several subjects or sessions and to document the final result of a study. This format was used since it is widely distributed and can be loaded by several other tools, like ANALYZE (Mayo clinics) or SPM (Welcome department of cognitive neurology, London). Processed data, however, will always be stored in Analyze-format. Image data can be imported from several sources.
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In addition to the voxel data, a header is used to store information for scan identification, the physical position of the object in space (important for co-registration of multiple scans) or the imaging protocol. The first three dimensions are used for describing the position of a voxel in space, the fourth dimension is reserved for independent parameters such as time, mass, wavelength or diffusion weighting. BioMap uses a 4-dimensional representation of imaging data. Other features linked to visualization are overlying of two individual data sets or displaying of ROIs. Visualization is based on multi-planar reconstruction allowing extraction of arbitrary slices from a 3D-volume. This platform can be extended by various software packages, individually designed for analysis of specific data sets. It provides a common visualization and storage platform, which can be used for visualization of data from any source, provided that an import filter exists for this format. It was modified over the years (1996 till now) to support many more imaging modalities, including optical, PET, CT, NIRF and MSI.īioMap was written in IDL™. With BioMap we have now a tool available which was originally developed for the evaluation of MRI data in biomedical research. With the development of the MALDI Mass Spectrometric Imaging Technology the availability of a powerful processing and displaying software became a crucial factor.
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Update from 3.8.x.x: BioMap3804Update.zip (3 MB) Including VM Mac: biomap3804mac.zip (334 MB) Including VM Linux: biomap3804linux.zip (290 MB) Including VM Win x32: biomap3804win32.zip (270 MB) Including VM Win 圆4 (recommended): biomap3804win64.zip (290 MB) Martin Rausch, MSI additions by Markus Stoeckli
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Windows, Unix, Linux or MAC OS (new) with IDL RT 6.1 or higher Rich featured biomedical image analysis software.
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The manual can be found by this VDRIVE manual.‘…it contains all the functions I could think of and many more which are extremely useful…’. Supporting software needed for using this software Multi-plots: line, scatters, contour, surface, mesh, projection…,.Editable one-step publishable figure output.Interactive data visualization for, strains, peak fitting parameters, TOF, mapping data in 2D/3D.Lattice strain calculation by single peak fitting and Rietveld refinement.Imbedded in SNS instrument software and managed data flow for real-time data reduction.Event neutron and sample environment data synchronization, separation and various time binning.Fast event based data reduction: time focusing, normalization, subtraction.Ke An, currently, lead scientist at VULCAN. It is developed for the unique event data structure at the Spallation Neutron Source (SNS) and specifically coded for Engineering Diffractometers such as VULCAN.
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VDRIVE is a suite of neutron diffraction data reduction and analysis software with interactive visualization functions.